Contour-based detection and quantification of tar spot stromata using RGB images of maize leaves

Listed in Datasets

By Da-Young Lee1, Dong-Yeop Na2, Carlos Gongora-Canul1, Sriram Baireddy2, Brenden Lane1, Andres P. Cruz1, Mariela Fernández-Campos3, Nathan M. Kleczewski4, Darcy E. P. Telenko1, Edward J. Delp2, Stephen Goodwin3, Christian D. Cruz1

1. Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, U.S.A 2. School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN 47907, U.S.A. 3. Purdue University 4. GROWMARK, Inc., Bloomington, IL, 61701, U.S.A

This dataset contains RGB images of the tar spot-infected corn leaves created for testing algorithm that uses contour analysis-based quantification of tar spot stromata.

Version 2.0 - published on 10 Aug 2021 doi:10.4231/SCQM-M479 - cite this Archived on 11 Sep 2021

Licensed under CC0 1.0 Universal

0 citation(s)

1068 total view(s), 223 download(s)

20200922_PP208_P2_L2.JPG IMG_9861.JPG IMG_9861_result.png IMG_9861_RoI.png IMG_9861_TS_mask.png

Description

Quantifying tar spot of corn intensity has traditionally been conducted by human raters through visual-based estimations. However, this traditional method is costly in terms of time and labor and prone to rater subjectivity. Furthermore, an objective, accurate and high throughput method for quantifying stromata on corn leaves is currently unavailable. Two datasets can be found here: one dataset which contains the images that were used to develop and improve the stromata contour detection algorithm (SCDA). Another dataset contains 466 RGB images of corn leaves acquired at the Pinney Purdue Agricultural Center (PPAC), Indiana and used as data for proof of concept case study to demonstrate the utility of the presented algorithm (SCDA).

Cite this work

Researchers should cite this work as follows:

Tags

  1. Botany and Plant Pathology
  2. Botany and Plant Pathology (Dept)
  3. emerging epidemic
  4. plant disease phenotyping
  5. stromata detection and quantification
  6. tar spot of corn
  7. temporal analysis

Notes

Contains an additional dataset comprised of 466 RGB corn leaf images which were acquired throughout six timepoints at Pinney Purdue Agricultural Center (PPAC), Indiana. Furthermore, the number of stromata and the proportion of maize leaf covered by tar spot stromata analyzed through the SCDA and mask R-CNN are included in the form of excel sheets.

The Purdue University Research Repository (PURR) is a university core research facility provided by the Purdue University Libraries and the Office of the Executive Vice President for Research and Partnerships, with support from additional campus partners.